Variant report

Variant	rs12347375
Chromosome Location	chr9:94301528-94301529
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10761119	0.88[AFR][1000 genomes]
rs1332380	0.82[AMR][1000 genomes]
rs1412466	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1412469	0.85[AFR][1000 genomes]
rs1492679	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16907585	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2131301	0.84[EUR][1000 genomes]
rs4743840	0.85[EUR][1000 genomes]
rs55709852	0.80[AMR][1000 genomes]
rs62562604	0.80[AMR][1000 genomes]
rs72742834	0.80[AMR][1000 genomes]
rs7467730	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7855644	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs902923	0.81[EUR][1000 genomes]
rs9409420	0.85[EUR][1000 genomes]
rs9409422	0.85[EUR][1000 genomes]
rs9409427	0.81[EUR][1000 genomes]
rs9409600	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9409602	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3332537	chr9:94298446-94327291	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94293200-94302000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:94299000-94305400	Weak transcription	Lung	lung
3	chr9:94299000-94307400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:94299600-94304000	Weak transcription	Osteobl	bone
5	chr9:94299600-94308600	Weak transcription	NH-A	brain
6	chr9:94299600-94308800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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