Variant report

Variant	rs1412466
Chromosome Location	chr9:94282510-94282511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12347375	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1332380	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16907585	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55709852	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55932694	0.82[EUR][1000 genomes]
rs62562598	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62562604	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72742834	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7467730	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7855644	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs902923	0.88[CEU][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap]
rs9409427	0.94[CEU][hapmap]
rs9409600	0.83[AMR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1412466	FBP2	cis	cerebellum	SCAN
rs1412466	PHF2	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94281200-94283200	Enhancers	NHDF-Ad	bronchial
2	chr9:94281200-94283400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:94282000-94282600	Enhancers	Osteobl	bone
4	chr9:94282400-94282600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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