Variant report

Variant	rs1332380
Chromosome Location	chr9:94293162-94293163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:11426543..11428854-chr9:94291625..94294247,2	MCF-7	breast:
2	chr9:94291588..94293189-chr9:94297156..94299545,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12347375	0.82[AMR][1000 genomes]
rs1412466	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1492679	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16907551	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16907585	0.83[AMR][1000 genomes]
rs2131301	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743840	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55709852	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55932694	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62562598	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62562604	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742834	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7467730	0.84[AMR][1000 genomes]
rs768056	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7855644	0.84[AMR][1000 genomes]
rs902923	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9409420	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9409422	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9409424	0.84[EUR][1000 genomes]
rs9409427	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9409600	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94291200-94294200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:94292400-94293200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr9:94292600-94293200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:94292600-94293600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:94292600-94293600	Enhancers	A549	lung
6	chr9:94292600-94294200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:94292800-94293200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr9:94292800-94293200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:94292800-94293200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:94292800-94293200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr9:94292800-94293200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:94292800-94293400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr9:94292800-94293400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr9:94292800-94293400	Enhancers	Fetal Lung	lung
15	chr9:94292800-94293600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr9:94292800-94293600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr9:94292800-94293600	Enhancers	NHLF	lung
18	chr9:94292800-94299800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr9:94293000-94293400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr9:94293000-94293600	Enhancers	Hela-S3	cervix
21	chr9:94293000-94293600	Enhancers	Osteobl	bone
22	chr9:94293000-94293800	Bivalent Enhancer	HepG2	liver
23	chr9:94293000-94294000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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