Variant report

Variant	rs768056
Chromosome Location	chr9:94266286-94266287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10991949	0.83[EUR][1000 genomes]
rs1332380	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1492679	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907551	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2131301	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4743840	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55709852	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55932694	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62562598	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62562604	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6479344	0.83[YRI][hapmap]
rs72742834	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs902923	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.96[GIH][hapmap];0.84[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes]
rs9409420	0.84[EUR][1000 genomes]
rs9409422	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9409427	0.93[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.84[AMR][1000 genomes]
rs9409600	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9409606	0.87[CEU][hapmap]
rs9409609	0.81[CEU][hapmap];0.80[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755169	chr9:94243545-94267645	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs768056	C14orf39	trans	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94259800-94266800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:94263400-94267800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr9:94264400-94266800	Enhancers	Colon Smooth Muscle	Colon
4	chr9:94264600-94266600	Enhancers	Rectal Smooth Muscle	rectum
5	chr9:94265600-94266600	Weak transcription	Fetal Intestine Small	intestine
6	chr9:94265800-94266600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:94266000-94266400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:94266000-94266400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
9	chr9:94266000-94266400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:94266000-94266400	Enhancers	Spleen	Spleen
11	chr9:94266000-94266600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:94266000-94266600	Enhancers	K562	blood
13	chr9:94266000-94266800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr9:94266000-94266800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr9:94266000-94267400	Enhancers	Fetal Stomach	stomach
16	chr9:94266200-94266400	Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr9:94266200-94266600	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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