Variant report

Variant	rs12442903
Chromosome Location	chr15:73832623-73832624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10851863	0.81[AMR][1000 genomes]
rs11072428	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs12148719	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12185108	0.86[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12593246	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1383616	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs1481088	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1481089	0.87[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16958079	0.81[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4470111	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4558379	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6495069	0.91[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7176637	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8028089	0.86[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8037836	0.91[CHB][hapmap];0.85[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs922687	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9920359	0.91[CHB][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv525433	chr15:73766072-73833600	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv904344	chr15:73800519-73864831	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73808200-73847400	Weak transcription	Left Ventricle	heart
2	chr15:73820800-73847600	Weak transcription	Aorta	Aorta
3	chr15:73821200-73846000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:73826800-73847600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr15:73827800-73847600	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:73831200-73833200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:73831400-73833000	Enhancers	HMEC	breast
8	chr15:73831600-73833000	Flanking Active TSS	A549	lung
9	chr15:73831800-73833000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr15:73831800-73833200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr15:73832000-73832800	Enhancers	Duodenum Mucosa	Duodenum
12	chr15:73832200-73833000	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr15:73832200-73833200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:73832200-73833200	Enhancers	Hela-S3	cervix
15	chr15:73832200-73834000	Enhancers	Stomach Mucosa	stomach
16	chr15:73832400-73832800	Weak transcription	Fetal Intestine Large	intestine
17	chr15:73832400-73833400	Weak transcription	Fetal Intestine Small	intestine
18	chr15:73832600-73833000	Enhancers	HepG2	liver
19	chr15:73832600-73847600	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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