Variant report

Variant	rs7176637
Chromosome Location	chr15:73850754-73850755
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11072428	1.00[CHB][hapmap];0.86[CHD][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap]
rs12148532	0.87[CHB][hapmap];0.85[TSI][hapmap]
rs12148719	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12185108	1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12442903	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12593246	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1383616	0.95[CHB][hapmap];0.91[CHD][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap]
rs1481088	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1481089	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16958079	0.95[CHB][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17185294	0.84[MEX][hapmap]
rs2509	0.83[MEX][hapmap]
rs4470111	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4558379	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6495069	0.95[CHB][hapmap];0.91[CHD][hapmap];0.83[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8023823	0.87[CHB][hapmap]
rs8028089	1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes]
rs8037836	0.95[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs922687	0.89[ASN][1000 genomes]
rs9920359	0.86[CHB][hapmap];0.81[CHD][hapmap];0.83[GIH][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv904344	chr15:73800519-73864831	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7176637	ARIH1	cis	cerebellum	SCAN
rs7176637	GLCE	cis	cerebellum	SCAN
rs7176637	PARP6	cis	parietal	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73837000-73860000	Weak transcription	Gastric	stomach
2	chr15:73838200-73851000	Weak transcription	Colonic Mucosa	Colon
3	chr15:73843800-73851200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:73844000-73856200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr15:73844200-73863800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr15:73844800-73865200	Weak transcription	Stomach Mucosa	stomach
7	chr15:73846000-73853400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr15:73846000-73855800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr15:73846000-73856200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:73846000-73856600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr15:73846000-73857000	Strong transcription	Stomach Smooth Muscle	stomach
12	chr15:73846200-73850800	Weak transcription	Ovary	ovary
13	chr15:73846200-73851000	Weak transcription	Fetal Brain Male	brain
14	chr15:73846200-73856600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr15:73846200-73863800	Strong transcription	Duodenum Mucosa	Duodenum
16	chr15:73846400-73851200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr15:73846400-73854800	Weak transcription	Psoas Muscle	Psoas
18	chr15:73846400-73863200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr15:73846800-73852200	Strong transcription	Fetal Stomach	stomach
20	chr15:73846800-73854800	Weak transcription	Brain Angular Gyrus	brain
21	chr15:73846800-73855400	Weak transcription	Brain Germinal Matrix	brain
22	chr15:73847000-73852200	Strong transcription	Fetal Intestine Small	intestine
23	chr15:73847000-73852200	Strong transcription	HSMMtube	muscle
24	chr15:73847000-73856000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:73847000-73856200	Strong transcription	Osteobl	bone
26	chr15:73847000-73856800	Strong transcription	NHEK	skin
27	chr15:73847200-73852200	Strong transcription	Primary T cells from cord blood	blood
28	chr15:73847200-73854800	Weak transcription	Brain Substantia Nigra	brain
29	chr15:73847200-73855400	Weak transcription	Fetal Thymus	thymus
30	chr15:73847400-73852200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:73847400-73855800	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr15:73847400-73856200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:73847400-73856200	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr15:73847400-73856400	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr15:73847400-73856600	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr15:73847400-73856600	Strong transcription	Left Ventricle	heart
37	chr15:73847400-73862000	Strong transcription	Fetal Intestine Large	intestine
38	chr15:73847400-73866000	Strong transcription	Adipose Nuclei	Adipose
39	chr15:73847400-73893200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr15:73847600-73851000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr15:73847600-73852200	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr15:73847600-73853200	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr15:73847600-73853400	Strong transcription	Colon Smooth Muscle	Colon
44	chr15:73847600-73853600	Strong transcription	NHLF	lung
45	chr15:73847600-73855400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr15:73847600-73855400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr15:73847600-73856200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:73847600-73858200	Strong transcription	Rectal Mucosa Donor 31	rectum
49	chr15:73847600-73865000	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr15:73847600-73865400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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