Variant report

Variant	rs8023823
Chromosome Location	chr15:73940058-73940059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73939721..73941528-chr15:73975209..73977396,2	MCF-7	breast:
2	chr15:73939318..73941377-chr15:73986958..73989689,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11072428	0.95[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11072429	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11072430	0.82[CEU][hapmap]
rs11637091	0.80[AMR][1000 genomes]
rs11637315	0.81[AMR][1000 genomes]
rs12148532	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12148719	0.81[EUR][1000 genomes]
rs12185108	0.87[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12593246	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12594595	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1383616	0.91[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1481089	0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16958079	0.87[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3743500	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56262972	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6495069	0.87[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs7169374	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8028089	0.87[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8036954	0.82[CEU][hapmap]
rs8037836	0.87[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap]
rs9920359	0.82[CEU][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73935000-73942600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr15:73937800-73941400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:73938800-73940800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr15:73938800-73941000	Enhancers	NHEK	skin
5	chr15:73939000-73940800	Enhancers	HMEC	breast
6	chr15:73939200-73940800	Enhancers	Hela-S3	cervix
7	chr15:73939600-73940600	Enhancers	Placenta	Placenta
8	chr15:73939600-73940600	Enhancers	A549	lung
9	chr15:73939800-73940600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:73939800-73940600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:73939800-73940800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:73940000-73940600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:73940000-73940600	Enhancers	HSMMtube	muscle
14	chr15:73940000-73940800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr15:73940000-73940800	Enhancers	Fetal Kidney	kidney
16	chr15:73940000-73940800	Enhancers	Placenta Amnion	Placenta Amnion

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