Variant report

Variant	rs7169374
Chromosome Location	chr15:73941389-73941390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11072428	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11072429	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12148532	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12148719	0.82[ASN][1000 genomes]
rs12185108	0.88[ASN][1000 genomes]
rs12593246	0.88[ASN][1000 genomes]
rs1383616	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1481089	0.87[ASN][1000 genomes]
rs16958079	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3743500	0.82[ASN][1000 genomes]
rs6495069	0.82[ASN][1000 genomes]
rs8023823	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8028089	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73935000-73942600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr15:73937800-73941400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:73940600-73942600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:73940600-73942600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:73940800-73942600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr15:73940800-73942600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:73940800-73942600	Weak transcription	Hela-S3	cervix
8	chr15:73940800-73942800	Weak transcription	HMEC	breast
9	chr15:73940800-73943000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:73941000-73942400	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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