Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73940424..73942779-chr15:73975265..73978457,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103855	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11072428	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11637091	0.84[AMR][1000 genomes]
rs11637315	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12148532	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12148719	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12185108	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12593246	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1383616	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1481088	0.82[ASN][1000 genomes]
rs1481089	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16958079	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3743500	0.85[ASN][1000 genomes]
rs56262972	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs57771618	0.84[AFR][1000 genomes]
rs6495069	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7169374	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7497012	0.84[AFR][1000 genomes]
rs8023823	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8028089	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8037836	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs922687	0.83[ASN][1000 genomes]
rs9920359	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73935000-73942600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr15:73940600-73942600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:73940600-73942600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:73940800-73942600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:73940800-73942600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr15:73940800-73942600	Weak transcription	Hela-S3	cervix
7	chr15:73940800-73942800	Weak transcription	HMEC	breast
8	chr15:73940800-73943000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:73941600-73944000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr15:73942400-73942800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr15:73942400-73943800	Enhancers	NHEK	skin
12	chr15:73942400-73944000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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