Variant report

Variant	rs56262972
Chromosome Location	chr15:73946745-73946746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11072429	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11072430	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11072431	0.85[ASN][1000 genomes]
rs11634399	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11637091	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11637315	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12591473	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12594175	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4075802	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56413315	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57771618	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6495073	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6495075	0.88[ASN][1000 genomes]
rs6495076	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7497012	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8023823	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs8036954	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73944000-73946800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr15:73944000-73946800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:73944200-73947000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links