Variant report

Variant	rs56413315
Chromosome Location	chr15:73948762-73948763
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11072428	0.81[AMR][1000 genomes]
rs11072430	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11072431	0.85[ASN][1000 genomes]
rs11634399	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11637091	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11637315	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12591473	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12594175	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4075802	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56262972	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57771618	0.80[AMR][1000 genomes]
rs6495073	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6495075	0.88[ASN][1000 genomes]
rs6495076	0.87[ASN][1000 genomes]
rs7497012	0.80[AMR][1000 genomes]
rs8036954	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73947400-73952200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr15:73947400-73952200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:73948000-73952200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:73948600-73949200	Active TSS	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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