Variant report

Variant	rs4075802
Chromosome Location	chr15:73963239-73963240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73962715..73965084-chr15:73986509..73988658,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11072428	0.84[ASW][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.87[MEX][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap]
rs11072430	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11072431	0.91[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11634399	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11637091	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11637315	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12148532	0.82[CEU][hapmap];0.83[MEX][hapmap]
rs12185108	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs12591473	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12594175	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12594595	0.82[CEU][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs1383616	0.85[JPT][hapmap];0.83[MEX][hapmap]
rs1481089	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs16958079	0.85[JPT][hapmap]
rs56262972	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56413315	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57771618	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6495069	0.85[JPT][hapmap]
rs6495073	0.86[ASN][1000 genomes]
rs6495075	0.83[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6495076	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7176654	0.83[CEU][hapmap];0.96[MEX][hapmap]
rs7497012	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8023823	0.82[CEU][hapmap]
rs8028089	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs8036954	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8037836	0.85[JPT][hapmap]
rs9920359	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4075802	PTPRK	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73963200-73965000	Weak transcription	Right Atrium	heart

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