Variant report

Variant	rs12594175
Chromosome Location	chr15:73973186-73973187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11072430	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072431	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11634399	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11637091	0.87[EUR][1000 genomes]
rs11637315	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12591473	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12594595	0.88[ASN][1000 genomes]
rs4075802	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56262972	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56413315	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57771618	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6495073	0.81[ASN][1000 genomes]
rs6495075	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495076	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7497012	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8036954	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73969800-73974000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:73970000-73973600	Weak transcription	Spleen	Spleen
3	chr15:73970000-73976000	Weak transcription	Pancreas	Pancrea
4	chr15:73970000-73976000	Weak transcription	Right Atrium	heart
5	chr15:73970200-73974800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:73970200-73974800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:73971000-73974800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:73971400-73973600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:73971800-73976000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:73972000-73973800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr15:73972000-73977000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:73972200-73976200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:73972400-73973800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr15:73972400-73976000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:73972600-73973400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:73972600-73973600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:73972600-73974800	Weak transcription	Adipose Nuclei	Adipose
18	chr15:73972800-73973800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:73972800-73973800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links