Variant report

Variant	rs11634399
Chromosome Location	chr15:73949210-73949211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73936970..73938963-chr15:73947330..73949724,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11072428	0.82[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes]
rs11072430	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11072431	0.92[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11637091	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11637315	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12148532	0.82[CEU][hapmap]
rs12185108	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs12591473	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12594175	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12594595	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs1383616	0.85[JPT][hapmap]
rs1481089	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs16958079	0.86[JPT][hapmap]
rs4075802	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56262972	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56413315	0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57771618	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6495069	0.85[JPT][hapmap]
rs6495073	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6495075	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6495076	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7176654	0.83[CEU][hapmap]
rs7497012	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8028089	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs8036954	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8037836	0.85[JPT][hapmap]
rs9920359	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73947400-73952200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr15:73947400-73952200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:73948000-73952200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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