Variant report

Variant	rs11637091
Chromosome Location	chr15:73943715-73943716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11072429	0.84[AMR][1000 genomes]
rs11072430	0.82[EUR][1000 genomes]
rs11634399	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11637315	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12591473	0.89[EUR][1000 genomes]
rs12594175	0.87[EUR][1000 genomes]
rs4075802	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56262972	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56413315	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57771618	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6495073	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6495076	0.81[EUR][1000 genomes]
rs7497012	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8023823	0.80[AMR][1000 genomes]
rs8036954	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73941600-73944000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:73942400-73943800	Enhancers	NHEK	skin
3	chr15:73942400-73944000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr15:73942600-73943800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:73942600-73943800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:73942600-73944000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr15:73942600-73944000	Enhancers	Hela-S3	cervix
8	chr15:73942600-73944200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:73942800-73943800	Enhancers	HMEC	breast
10	chr15:73942800-73944000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr15:73943000-73943800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:73943000-73943800	Enhancers	Small Intestine	intestine
13	chr15:73943200-73943800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr15:73943400-73943800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:73943600-73943800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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