Variant report

Variant	rs6495076
Chromosome Location	chr15:73982965-73982966
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73970534..73973218-chr15:73980839..73983743,2	K562	blood:
2	chr15:73975757..73978225-chr15:73981884..73983840,2	K562	blood:
3	chr15:73935857..73937490-chr15:73980452..73983279,2	MCF-7	breast:
4	chr15:73976725..73980225-chr15:73982340..73984111,3	K562	blood:
5	chr15:73921937..73932817-chr15:73973872..73983627,19	MCF-7	breast:
6	chr15:73982397..73984992-chr15:73997157..73999264,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11072428	0.82[JPT][hapmap]
rs11072430	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11072431	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11634399	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11637091	0.81[EUR][1000 genomes]
rs11637315	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12185108	0.82[JPT][hapmap]
rs12591473	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12594175	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12594595	0.86[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1383616	0.81[JPT][hapmap]
rs1481089	0.82[JPT][hapmap]
rs16958079	0.82[JPT][hapmap]
rs4075802	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56262972	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56413315	0.87[ASN][1000 genomes]
rs57771618	0.85[EUR][1000 genomes]
rs6495069	0.82[JPT][hapmap]
rs6495073	0.81[ASN][1000 genomes]
rs6495075	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7176654	0.84[CEU][hapmap];0.83[AMR][1000 genomes]
rs7497012	0.85[EUR][1000 genomes]
rs8028089	0.82[JPT][hapmap]
rs8036954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8037836	0.81[JPT][hapmap]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73978600-73983600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:73978800-73983600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:73978800-73983600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr15:73978800-73983800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:73978800-73983800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr15:73978800-73989000	Weak transcription	Fetal Kidney	kidney
7	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr15:73979000-73985400	Enhancers	Adipose Nuclei	Adipose
9	chr15:73979200-73983400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr15:73979200-73983800	Weak transcription	Colonic Mucosa	Colon
11	chr15:73979200-73985000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr15:73979400-73983400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:73979400-73983800	Enhancers	NHEK	skin
14	chr15:73979400-73986200	Weak transcription	Psoas Muscle	Psoas
15	chr15:73979400-73986800	Weak transcription	Aorta	Aorta
16	chr15:73979400-73989000	Weak transcription	Fetal Intestine Large	intestine
17	chr15:73979400-73996400	Weak transcription	A549	lung
18	chr15:73979600-73983000	Weak transcription	Fetal Intestine Small	intestine
19	chr15:73979600-73983400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:73979800-73984200	Enhancers	NH-A	brain
21	chr15:73979800-73984600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:73980000-73983600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr15:73980200-73983400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr15:73980200-73983600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr15:73980200-73983800	Weak transcription	Esophagus	oesophagus
26	chr15:73980200-73988400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr15:73980400-73983000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:73980400-73983200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:73980400-73983200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr15:73980400-73983600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr15:73980400-73983600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:73980400-73986200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:73980600-73983400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr15:73980600-73983400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr15:73980600-73983600	Weak transcription	Brain Angular Gyrus	brain
36	chr15:73980600-73983600	Weak transcription	Brain Anterior Caudate	brain
37	chr15:73980600-73988400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr15:73980600-73988400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr15:73981000-73983200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr15:73981000-73983600	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr15:73981000-73983600	Weak transcription	Fetal Stomach	stomach
42	chr15:73981000-73983800	Weak transcription	Brain Hippocampus Middle	brain
43	chr15:73981000-73984200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr15:73981200-73983400	Weak transcription	Fetal Lung	lung
45	chr15:73981400-73983400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr15:73981400-73983800	Weak transcription	Fetal Brain Female	brain
47	chr15:73981400-73988000	Weak transcription	Spleen	Spleen
48	chr15:73981600-73983000	Weak transcription	Right Atrium	heart
49	chr15:73981600-73983000	Weak transcription	Right Ventricle	heart
50	chr15:73981600-73983400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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