Variant report

Variant	rs1481089
Chromosome Location	chr15:73895851-73895852
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73891083..73895912-chr15:73975299..73977983,6	MCF-7	breast:
2	chr15:73889513..73892246-chr15:73895436..73898371,2	K562	blood:
3	chr15:73895579..73902471-chr15:73924238..73927727,8	MCF-7	breast:
4	chr15:73893850..73896268-chr15:73911342..73914138,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10851863	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11072428	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11072429	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11072430	0.80[JPT][hapmap]
rs11072431	0.81[JPT][hapmap]
rs12148532	0.86[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12148719	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12185108	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12442903	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12593246	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1383616	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1481088	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16958079	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3743500	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4470111	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4558379	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6495069	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6495075	0.80[JPT][hapmap]
rs6495076	0.82[JPT][hapmap]
rs7169374	0.87[ASN][1000 genomes]
rs7176637	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8023823	0.88[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8028089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8037836	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs922687	0.90[ASN][1000 genomes]
rs9920359	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73885800-73896200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr15:73885800-73896200	Enhancers	Colon Smooth Muscle	Colon
3	chr15:73888400-73896400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:73891800-73896000	Enhancers	Fetal Intestine Large	intestine
5	chr15:73892000-73896000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr15:73892200-73896400	Enhancers	GM12878-XiMat	blood
7	chr15:73892200-73897400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr15:73892400-73896200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:73893000-73896000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr15:73893200-73896200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr15:73893200-73897200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr15:73893400-73896200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr15:73893800-73896000	Enhancers	Primary hematopoietic stem cells	blood
14	chr15:73893800-73896400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr15:73893800-73896400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr15:73894000-73896400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr15:73894000-73897000	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr15:73894200-73896400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr15:73894200-73896600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:73894400-73896200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:73894400-73896400	Enhancers	Primary T cells from cord blood	blood
22	chr15:73894400-73896800	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr15:73894400-73901600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:73894600-73896200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr15:73894600-73897400	Enhancers	Fetal Heart	heart
26	chr15:73894800-73896400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:73894800-73896600	Enhancers	Fetal Brain Female	brain
28	chr15:73895000-73896400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:73895000-73896400	Enhancers	Stomach Smooth Muscle	stomach
30	chr15:73895000-73897400	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr15:73895000-73898200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr15:73895000-73898800	Enhancers	Rectal Smooth Muscle	rectum
33	chr15:73895000-73910000	Weak transcription	Hela-S3	cervix
34	chr15:73895000-73924400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:73895200-73896000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:73895200-73896000	Enhancers	HUVEC	blood vessel
37	chr15:73895200-73896000	Enhancers	NHDF-Ad	bronchial
38	chr15:73895200-73896400	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr15:73895200-73896400	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr15:73895200-73896600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:73895200-73896600	Weak transcription	Lung	lung
42	chr15:73895200-73896600	Weak transcription	Pancreas	Pancrea
43	chr15:73895200-73897000	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr15:73895200-73898200	Weak transcription	Ovary	ovary
45	chr15:73895200-73899200	Weak transcription	Aorta	Aorta
46	chr15:73895200-73899400	Weak transcription	Fetal Muscle Leg	muscle
47	chr15:73895200-73900400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr15:73895200-73902600	Weak transcription	Fetal Stomach	stomach
49	chr15:73895200-73921400	Weak transcription	Fetal Thymus	thymus
50	chr15:73895200-73924200	Weak transcription	Esophagus	oesophagus

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