Variant report

Variant	rs922687
Chromosome Location	chr15:73848808-73848809
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73848290..73849987-chr15:73853101..73855624,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11072428	0.91[CHB][hapmap];0.90[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.84[ASN][1000 genomes]
rs11072429	0.83[ASN][1000 genomes]
rs11072430	0.80[JPT][hapmap]
rs11072431	0.80[JPT][hapmap]
rs12148532	0.81[CHD][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.88[MEX][hapmap]
rs12148719	0.93[ASN][1000 genomes]
rs12185108	0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.81[TSI][hapmap];0.83[YRI][hapmap];0.90[ASN][1000 genomes]
rs12442903	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12593246	0.90[ASN][1000 genomes]
rs1383616	0.86[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.84[ASN][1000 genomes]
rs1481088	0.97[AFR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1481089	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[ASN][1000 genomes]
rs16958079	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[ASN][1000 genomes]
rs4470111	0.95[ASN][1000 genomes]
rs4558379	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6495069	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.83[TSI][hapmap];0.93[YRI][hapmap];0.90[ASN][1000 genomes]
rs6495075	0.80[JPT][hapmap]
rs6495076	0.82[JPT][hapmap]
rs7171755	0.81[ASN][1000 genomes]
rs7176637	0.89[ASN][1000 genomes]
rs8023823	0.85[JPT][hapmap]
rs8028089	0.91[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs8037836	0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.94[ASN][1000 genomes]
rs9920359	0.95[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv904344	chr15:73800519-73864831	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs922687	ARIH1	cis	cerebellum	SCAN

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73836200-73850600	Weak transcription	HUVEC	blood vessel
2	chr15:73837000-73860000	Weak transcription	Gastric	stomach
3	chr15:73838200-73850400	Weak transcription	Right Ventricle	heart
4	chr15:73838200-73851000	Weak transcription	Colonic Mucosa	Colon
5	chr15:73843400-73849200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr15:73843800-73851200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:73844000-73856200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:73844200-73863800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:73844800-73850600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:73844800-73865200	Weak transcription	Stomach Mucosa	stomach
11	chr15:73845600-73850400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:73846000-73850600	Strong transcription	NHDF-Ad	bronchial
13	chr15:73846000-73853400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr15:73846000-73855800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr15:73846000-73856200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:73846000-73856600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:73846000-73857000	Strong transcription	Stomach Smooth Muscle	stomach
18	chr15:73846200-73850000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr15:73846200-73850200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr15:73846200-73850800	Weak transcription	Ovary	ovary
21	chr15:73846200-73851000	Weak transcription	Fetal Brain Male	brain
22	chr15:73846200-73856600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:73846200-73863800	Strong transcription	Duodenum Mucosa	Duodenum
24	chr15:73846400-73849800	Weak transcription	HepG2	liver
25	chr15:73846400-73850000	Weak transcription	Fetal Kidney	kidney
26	chr15:73846400-73850400	Weak transcription	GM12878-XiMat	blood
27	chr15:73846400-73851200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr15:73846400-73854800	Weak transcription	Psoas Muscle	Psoas
29	chr15:73846400-73863200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr15:73846800-73852200	Strong transcription	Fetal Stomach	stomach
31	chr15:73846800-73854800	Weak transcription	Brain Angular Gyrus	brain
32	chr15:73846800-73855400	Weak transcription	Brain Germinal Matrix	brain
33	chr15:73847000-73849400	Strong transcription	Fetal Muscle Trunk	muscle
34	chr15:73847000-73850400	Weak transcription	Fetal Lung	lung
35	chr15:73847000-73852200	Strong transcription	Fetal Intestine Small	intestine
36	chr15:73847000-73852200	Strong transcription	HSMMtube	muscle
37	chr15:73847000-73856000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:73847000-73856200	Strong transcription	Osteobl	bone
39	chr15:73847000-73856800	Strong transcription	NHEK	skin
40	chr15:73847200-73852200	Strong transcription	Primary T cells from cord blood	blood
41	chr15:73847200-73854800	Weak transcription	Brain Substantia Nigra	brain
42	chr15:73847200-73855400	Weak transcription	Fetal Thymus	thymus
43	chr15:73847400-73849000	Genic enhancers	Thymus	Thymus
44	chr15:73847400-73849200	Strong transcription	Brain Anterior Caudate	brain
45	chr15:73847400-73849400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr15:73847400-73849400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr15:73847400-73849400	Strong transcription	Spleen	Spleen
48	chr15:73847400-73850200	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr15:73847400-73852200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:73847400-73855800	Strong transcription	Primary monocytes fromperipheralblood	blood

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