The 2.0 version of rSNPBase

Variant report

Variant rs12461387
Chromosome Location chr19:38585666-38585667
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38539200-38591200 Weak transcription Small Intestine intestine
2 chr19:38550800-38590000 Weak transcription Rectal Smooth Muscle rectum
3 chr19:38551200-38613800 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr19:38565600-38588400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr19:38567600-38605400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
6 chr19:38568000-38590200 Strong transcription Fetal Intestine Small intestine
7 chr19:38570800-38590200 Weak transcription Fetal Thymus thymus
8 chr19:38571000-38590000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr19:38571000-38590200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr19:38571200-38590200 Weak transcription HMEC breast
11 chr19:38571200-38590200 Weak transcription NHEK skin
12 chr19:38571400-38586000 Strong transcription A549 lung
13 chr19:38571800-38586000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr19:38571800-38586600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr19:38572000-38585800 Strong transcription Primary B cells from peripheral blood blood
16 chr19:38572000-38586000 Weak transcription ES-I3 Cell Line embryonic stem cell
17 chr19:38572200-38585800 Weak transcription NHDF-Ad bronchial
18 chr19:38573600-38586000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
19 chr19:38573600-38590000 Weak transcription Primary T regulatory cells fromperipheralblood blood
20 chr19:38573600-38610000 Strong transcription Fetal Intestine Large intestine
21 chr19:38574000-38586000 Weak transcription NHLF lung
22 chr19:38574000-38590000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
23 chr19:38574000-38590200 Weak transcription Aorta Aorta
24 chr19:38574000-38590600 Weak transcription Placenta Amnion Placenta Amnion
25 chr19:38574200-38589600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr19:38574200-38590200 Weak transcription Primary T killer naive cells fromperipheralblood blood
27 chr19:38574200-38590200 Weak transcription HUVEC blood vessel
28 chr19:38574400-38590000 Weak transcription iPS-20b Cell Line embryonic stem cell
29 chr19:38575400-38586000 Weak transcription Placenta Placenta
30 chr19:38576400-38590000 Weak transcription Primary T helper naive cells from peripheral blood blood
31 chr19:38577400-38586000 Weak transcription Fetal Kidney kidney
32 chr19:38577600-38587000 Strong transcription Primary T cells from cord blood blood
33 chr19:38579600-38586200 Weak transcription H1 Cell Line embryonic stem cell
34 chr19:38579600-38590400 Weak transcription Esophagus oesophagus
35 chr19:38579800-38590200 Weak transcription Primary T helper cells PMA-I stimulated --
36 chr19:38579800-38590200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
37 chr19:38580000-38590600 Weak transcription Colon Smooth Muscle Colon
38 chr19:38580200-38590000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr19:38580400-38590400 Weak transcription Primary T cells fromperipheralblood blood
40 chr19:38580400-38594800 Weak transcription HSMMtube muscle
41 chr19:38580600-38585800 Weak transcription Fetal Brain Female brain
42 chr19:38580600-38588000 Weak transcription NH-A brain
43 chr19:38580600-38588600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
44 chr19:38580600-38588600 Weak transcription HSMM muscle
45 chr19:38580600-38590000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr19:38580600-38590000 Weak transcription Dnd41 blood
47 chr19:38580600-38590200 Weak transcription H9 Cell Line embryonic stem cell
48 chr19:38580600-38590200 Weak transcription Fetal Lung lung
49 chr19:38580600-38590200 Weak transcription Ovary ovary
50 chr19:38580600-38590200 Weak transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015