Variant report

Variant	rs3852910
Chromosome Location	chr19:38604978-38604979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:38604586..38606112-chr19:38715121..38717021,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10460171	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11083447	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12459984	0.82[ASN][1000 genomes]
rs12460013	0.82[ASN][1000 genomes]
rs12460188	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12461387	0.84[ASN][1000 genomes]
rs12461946	0.80[ASN][1000 genomes]
rs12462587	0.83[ASN][1000 genomes]
rs12971962	0.82[ASN][1000 genomes]
rs12974504	0.84[ASN][1000 genomes]
rs12975576	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12976860	0.84[EUR][1000 genomes]
rs12981412	0.84[ASN][1000 genomes]
rs12982030	0.87[ASN][1000 genomes]
rs12982734	0.84[ASN][1000 genomes]
rs12983059	0.84[ASN][1000 genomes]
rs12983497	0.84[ASN][1000 genomes]
rs12984016	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12984380	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12984864	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12985707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545039	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1962866	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2004981	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2010234	0.88[EUR][1000 genomes]
rs2016074	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2116862	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2163817	0.91[EUR][1000 genomes]
rs2304132	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2382972	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2382973	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2569517	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs332845	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs332846	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs332854	0.84[EUR][1000 genomes]
rs332857	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs332859	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs332860	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs332861	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs332862	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs332863	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34646932	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35467693	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35469521	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35972455	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3745943	0.84[ASN][1000 genomes]
rs3852911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4802248	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4803747	0.84[ASN][1000 genomes]
rs4803805	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4803808	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67910767	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71337549	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7253312	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7253633	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7258019	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8100956	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8102589	0.83[ASN][1000 genomes]
rs8107385	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs855617	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38551200-38613800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr19:38567600-38605400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr19:38573600-38610000	Strong transcription	Fetal Intestine Large	intestine
4	chr19:38581600-38610000	Weak transcription	Psoas Muscle	Psoas
5	chr19:38587000-38605400	Strong transcription	Primary B cells from peripheral blood	blood
6	chr19:38587200-38613600	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr19:38587400-38613400	Strong transcription	Duodenum Mucosa	Duodenum
8	chr19:38588800-38606600	Strong transcription	Liver	Liver
9	chr19:38589200-38606800	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr19:38590200-38605200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr19:38590200-38605800	Strong transcription	Adipose Nuclei	Adipose
12	chr19:38590200-38606600	Strong transcription	Sigmoid Colon	Sigmoid Colon
13	chr19:38590200-38606600	Strong transcription	Stomach Smooth Muscle	stomach
14	chr19:38590200-38611000	Strong transcription	Duodenum Smooth Muscle	Duodenum
15	chr19:38590400-38606400	Strong transcription	Fetal Brain Female	brain
16	chr19:38590400-38609800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr19:38590800-38606600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr19:38590800-38608800	Strong transcription	Fetal Intestine Small	intestine
19	chr19:38591000-38605000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr19:38591200-38605400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr19:38591200-38605400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr19:38591200-38605800	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr19:38591400-38605400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr19:38591800-38609000	Strong transcription	Fetal Stomach	stomach
25	chr19:38591800-38642800	Weak transcription	Small Intestine	intestine
26	chr19:38594400-38606800	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr19:38594600-38606800	Strong transcription	GM12878-XiMat	blood
28	chr19:38595800-38605000	Strong transcription	Fetal Muscle Trunk	muscle
29	chr19:38595800-38605800	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr19:38595800-38606200	Strong transcription	Ovary	ovary
31	chr19:38595800-38606600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr19:38596000-38610000	Strong transcription	Fetal Muscle Leg	muscle
33	chr19:38596000-38613800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr19:38596200-38605800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr19:38596200-38606600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr19:38597000-38606400	Strong transcription	Colonic Mucosa	Colon
37	chr19:38597800-38606600	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr19:38597800-38610200	Weak transcription	HUVEC	blood vessel
39	chr19:38597800-38611800	Strong transcription	Osteobl	bone
40	chr19:38597800-38612000	Strong transcription	HSMM	muscle
41	chr19:38598000-38605000	Weak transcription	HMEC	breast
42	chr19:38598000-38606000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr19:38598000-38610200	Strong transcription	A549	lung
44	chr19:38598200-38606000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr19:38598200-38611800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr19:38598800-38606600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr19:38599400-38605600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr19:38599800-38606600	Strong transcription	HSMMtube	muscle
49	chr19:38600200-38606800	Strong transcription	Brain Hippocampus Middle	brain
50	chr19:38600600-38652800	Weak transcription	NHDF-Ad	bronchial

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