Variant report

Variant	rs8102589
Chromosome Location	chr19:38589121-38589122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12459984	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12460013	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12461387	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12461946	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12462587	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12971962	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12974504	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12979004	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12981412	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12982030	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12982734	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12983059	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12983497	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12984380	0.84[AFR][1000 genomes]
rs12985707	0.83[ASN][1000 genomes]
rs1962866	0.82[ASN][1000 genomes]
rs2382972	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2382973	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs35469521	0.82[ASN][1000 genomes]
rs3745943	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3852910	0.83[ASN][1000 genomes]
rs3852911	0.83[ASN][1000 genomes]
rs4802230	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4803747	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38539200-38591200	Weak transcription	Small Intestine	intestine
2	chr19:38550800-38590000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr19:38551200-38613800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr19:38567600-38605400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr19:38568000-38590200	Strong transcription	Fetal Intestine Small	intestine
6	chr19:38570800-38590200	Weak transcription	Fetal Thymus	thymus
7	chr19:38571000-38590000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr19:38571000-38590200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr19:38571200-38590200	Weak transcription	HMEC	breast
10	chr19:38571200-38590200	Weak transcription	NHEK	skin
11	chr19:38573600-38590000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr19:38573600-38610000	Strong transcription	Fetal Intestine Large	intestine
13	chr19:38574000-38590000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr19:38574000-38590200	Weak transcription	Aorta	Aorta
15	chr19:38574000-38590600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr19:38574200-38589600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr19:38574200-38590200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr19:38574200-38590200	Weak transcription	HUVEC	blood vessel
19	chr19:38574400-38590000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr19:38576400-38590000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr19:38579600-38590400	Weak transcription	Esophagus	oesophagus
22	chr19:38579800-38590200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr19:38579800-38590200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr19:38580000-38590600	Weak transcription	Colon Smooth Muscle	Colon
25	chr19:38580200-38590000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr19:38580400-38590400	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr19:38580400-38594800	Weak transcription	HSMMtube	muscle
28	chr19:38580600-38590000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr19:38580600-38590000	Weak transcription	Dnd41	blood
30	chr19:38580600-38590200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr19:38580600-38590200	Weak transcription	Fetal Lung	lung
32	chr19:38580600-38590200	Weak transcription	Ovary	ovary
33	chr19:38580600-38590200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr19:38580600-38590400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr19:38580600-38590600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr19:38580600-38596000	Weak transcription	Stomach Mucosa	stomach
37	chr19:38580800-38590200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr19:38581200-38589400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr19:38581600-38590200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr19:38581600-38610000	Weak transcription	Psoas Muscle	Psoas
41	chr19:38581800-38590200	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr19:38581800-38590200	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr19:38581800-38590200	Weak transcription	Gastric	stomach
44	chr19:38581800-38590400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr19:38581800-38590400	Weak transcription	Brain Germinal Matrix	brain
46	chr19:38582000-38590000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr19:38582000-38590400	Weak transcription	Thymus	Thymus
48	chr19:38582200-38590200	Weak transcription	Hela-S3	cervix
49	chr19:38582400-38590000	Weak transcription	Primary hematopoietic stem cells	blood
50	chr19:38582400-38590200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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