The 2.0 version of rSNPBase

Variant report

Variant rs12983059
Chromosome Location chr19:38587800-38587801
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:38539200-38591200 Weak transcription Small Intestine intestine
2 chr19:38550800-38590000 Weak transcription Rectal Smooth Muscle rectum
3 chr19:38551200-38613800 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr19:38565600-38588400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr19:38567600-38605400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
6 chr19:38568000-38590200 Strong transcription Fetal Intestine Small intestine
7 chr19:38570800-38590200 Weak transcription Fetal Thymus thymus
8 chr19:38571000-38590000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr19:38571000-38590200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr19:38571200-38590200 Weak transcription HMEC breast
11 chr19:38571200-38590200 Weak transcription NHEK skin
12 chr19:38573600-38590000 Weak transcription Primary T regulatory cells fromperipheralblood blood
13 chr19:38573600-38610000 Strong transcription Fetal Intestine Large intestine
14 chr19:38574000-38590000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
15 chr19:38574000-38590200 Weak transcription Aorta Aorta
16 chr19:38574000-38590600 Weak transcription Placenta Amnion Placenta Amnion
17 chr19:38574200-38589600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr19:38574200-38590200 Weak transcription Primary T killer naive cells fromperipheralblood blood
19 chr19:38574200-38590200 Weak transcription HUVEC blood vessel
20 chr19:38574400-38590000 Weak transcription iPS-20b Cell Line embryonic stem cell
21 chr19:38576400-38590000 Weak transcription Primary T helper naive cells from peripheral blood blood
22 chr19:38579600-38590400 Weak transcription Esophagus oesophagus
23 chr19:38579800-38590200 Weak transcription Primary T helper cells PMA-I stimulated --
24 chr19:38579800-38590200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr19:38580000-38590600 Weak transcription Colon Smooth Muscle Colon
26 chr19:38580200-38590000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr19:38580400-38590400 Weak transcription Primary T cells fromperipheralblood blood
28 chr19:38580400-38594800 Weak transcription HSMMtube muscle
29 chr19:38580600-38588000 Weak transcription NH-A brain
30 chr19:38580600-38588600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr19:38580600-38588600 Weak transcription HSMM muscle
32 chr19:38580600-38590000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
33 chr19:38580600-38590000 Weak transcription Dnd41 blood
34 chr19:38580600-38590200 Weak transcription H9 Cell Line embryonic stem cell
35 chr19:38580600-38590200 Weak transcription Fetal Lung lung
36 chr19:38580600-38590200 Weak transcription Ovary ovary
37 chr19:38580600-38590200 Weak transcription Stomach Smooth Muscle stomach
38 chr19:38580600-38590400 Weak transcription Primary T helper naive cells fromperipheralblood blood
39 chr19:38580600-38590600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr19:38580600-38596000 Weak transcription Stomach Mucosa stomach
41 chr19:38580800-38590200 Weak transcription Duodenum Smooth Muscle Duodenum
42 chr19:38581200-38589400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr19:38581600-38588800 Weak transcription Liver Liver
44 chr19:38581600-38590200 Weak transcription Primary T helper cells fromperipheralblood blood
45 chr19:38581600-38610000 Weak transcription Psoas Muscle Psoas
46 chr19:38581800-38588600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
47 chr19:38581800-38590200 Weak transcription Primary monocytes fromperipheralblood blood
48 chr19:38581800-38590200 Weak transcription Primary neutrophils fromperipheralblood blood
49 chr19:38581800-38590200 Weak transcription Gastric stomach
50 chr19:38581800-38590400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell

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Last update: Aug 31, 2015