Variant report

Variant	rs12463587
Chromosome Location	chr2:56530602-56530603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10172020	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10203280	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11125619	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11125620	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11125621	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11125622	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12233052	0.83[EUR][1000 genomes]
rs12465842	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13384655	0.85[EUR][1000 genomes]
rs13384837	0.85[EUR][1000 genomes]
rs13389344	0.84[EUR][1000 genomes]
rs13392111	0.85[EUR][1000 genomes]
rs1549031	0.85[EUR][1000 genomes]
rs17047781	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17047791	0.80[AMR][1000 genomes]
rs28456238	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28741029	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4671278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4672105	0.85[EUR][1000 genomes]
rs4672106	0.85[EUR][1000 genomes]
rs4672107	0.85[EUR][1000 genomes]
rs4672109	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6732270	0.85[EUR][1000 genomes]
rs6732854	0.85[EUR][1000 genomes]
rs72803024	0.85[EUR][1000 genomes]
rs72803026	0.85[EUR][1000 genomes]
rs72803034	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7355411	0.85[EUR][1000 genomes]
rs7566597	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56527400-56531200	Weak transcription	Adipose Nuclei	Adipose
2	chr2:56527400-56540600	Weak transcription	Left Ventricle	heart
3	chr2:56527400-56547400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr2:56527600-56561000	Weak transcription	HSMM	muscle
5	chr2:56530000-56530800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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