Variant report
| Variant | rs13392111 |
|---|---|
| Chromosome Location | chr2:56508082-56508083 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs12463587 | 0.85[EUR][1000 genomes] |
| rs13384514 | 0.87[AFR][1000 genomes] |
| rs13384655 | 0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs13384837 | 0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs13387928 | 0.90[AFR][1000 genomes] |
| rs13389344 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13403550 | 0.92[AFR][1000 genomes] |
| rs13421888 | 0.86[AFR][1000 genomes] |
| rs13429018 | 0.88[AFR][1000 genomes] |
| rs13431571 | 0.88[AFR][1000 genomes] |
| rs1549031 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17047791 | 0.86[EUR][1000 genomes] |
| rs2904126 | 0.88[AFR][1000 genomes] |
| rs4671278 | 0.85[EUR][1000 genomes] |
| rs4672105 | 0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4672106 | 0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4672107 | 0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs60143847 | 0.95[AFR][1000 genomes] |
| rs6732270 | 0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72803024 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72803026 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72927159 | 0.86[AFR][1000 genomes] |
| rs7355411 | 0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs754102 | 0.88[AFR][1000 genomes] |
| rs7566597 | 0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530516 | chr2:56447922-56633505 | Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv522006 | chr2:56496589-56545845 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv874170 | chr2:56496589-56590865 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:56488000-56514000 | Weak transcription | HSMM | muscle |
| 2 | chr2:56503200-56513400 | Weak transcription | Muscle Satellite Cultured Cells | -- |
