Variant report

Variant	rs72803026
Chromosome Location	chr2:56514580-56514581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12463587	0.85[EUR][1000 genomes]
rs13384655	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13384837	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13389344	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13392111	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1549031	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17047791	0.86[EUR][1000 genomes]
rs4671278	0.85[EUR][1000 genomes]
rs4672105	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4672106	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4672107	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6732270	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72803024	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7355411	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7566597	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56513400-56516400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:56514000-56515800	Enhancers	HMEC	breast
3	chr2:56514000-56515800	Enhancers	NH-A	brain
4	chr2:56514000-56515800	Enhancers	NHEK	skin
5	chr2:56514000-56516400	Enhancers	HSMM	muscle
6	chr2:56514000-56517000	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr2:56514200-56514600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:56514200-56514600	Enhancers	Right Atrium	heart
9	chr2:56514200-56515200	Enhancers	Fetal Intestine Small	intestine
10	chr2:56514200-56515400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:56514200-56515400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:56514200-56515400	Enhancers	HUVEC	blood vessel
13	chr2:56514200-56516000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:56514200-56517800	Enhancers	Fetal Intestine Large	intestine
15	chr2:56514400-56514600	Enhancers	Psoas Muscle	Psoas
16	chr2:56514400-56514600	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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