Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10172020	0.81[CEU][hapmap]
rs10203280	0.82[CEU][hapmap]
rs11125619	0.82[CEU][hapmap]
rs11125622	0.82[CEU][hapmap]
rs12463587	0.85[EUR][1000 genomes]
rs13384837	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389344	1.00[CEU][hapmap];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13392111	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1549031	1.00[CEU][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17047781	0.84[CEU][hapmap]
rs17047791	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17047802	0.84[CEU][hapmap]
rs4671278	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4672105	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4672106	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4672107	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4672109	0.82[CEU][hapmap]
rs6714529	0.81[AFR][1000 genomes]
rs6732270	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72803024	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72803026	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7355411	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566597	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56515600-56526600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:56516400-56523400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:56516400-56525800	Weak transcription	HSMM	muscle
4	chr2:56516800-56524800	Weak transcription	Psoas Muscle	Psoas
5	chr2:56517200-56524800	Weak transcription	Left Ventricle	heart
6	chr2:56517400-56520000	Weak transcription	Adipose Nuclei	Adipose

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