Variant report

Variant	rs4671278
Chromosome Location	chr2:56528373-56528374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10172020	0.83[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10200604	0.83[CHB][hapmap]
rs10203280	0.85[CEU][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11125619	0.85[CEU][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11125620	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11125621	0.81[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11125622	0.85[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12233052	0.82[EUR][1000 genomes]
rs12463587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12465842	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13384655	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs13384837	0.85[EUR][1000 genomes]
rs13389344	1.00[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs13392111	0.85[EUR][1000 genomes]
rs1549031	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[EUR][1000 genomes]
rs17047781	0.85[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17047791	0.80[AMR][1000 genomes]
rs17047802	0.85[CEU][hapmap];0.95[JPT][hapmap]
rs17047851	0.83[CHB][hapmap]
rs17047854	0.83[CHB][hapmap]
rs17268785	0.83[CHB][hapmap]
rs28456238	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28741029	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4672105	0.85[EUR][1000 genomes]
rs4672106	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[EUR][1000 genomes]
rs4672107	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4672109	0.84[CEU][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4672110	0.83[CHB][hapmap]
rs6545572	0.83[CHB][hapmap]
rs6704684	0.83[CHB][hapmap]
rs6732270	0.85[EUR][1000 genomes]
rs6732854	0.82[EUR][1000 genomes]
rs6735003	0.83[CHB][hapmap]
rs6747380	0.91[CHB][hapmap]
rs6748308	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs6760269	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs72803024	0.85[EUR][1000 genomes]
rs72803026	0.85[EUR][1000 genomes]
rs72803034	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7355411	1.00[CEU][hapmap];0.92[CHB][hapmap];0.84[MEX][hapmap];0.85[EUR][1000 genomes]
rs7562381	0.83[CHB][hapmap]
rs7566597	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530516	chr2:56447922-56633505	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv522006	chr2:56496589-56545845	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv874170	chr2:56496589-56590865	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56527200-56530000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr2:56527400-56531200	Weak transcription	Adipose Nuclei	Adipose
3	chr2:56527400-56540600	Weak transcription	Left Ventricle	heart
4	chr2:56527400-56547400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:56527600-56561000	Weak transcription	HSMM	muscle

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