The 2.0 version of rSNPBase

Variant report

Variant rs12469980
Chromosome Location chr2:11415918-11415919
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:11310600-11433000 Weak transcription Pancreas Pancrea
2 chr2:11352800-11424000 Weak transcription HSMMtube muscle
3 chr2:11354600-11423800 Weak transcription Brain Inferior Temporal Lobe brain
4 chr2:11361000-11416600 Weak transcription Primary T regulatory cells fromperipheralblood blood
5 chr2:11361200-11425600 Weak transcription Stomach Smooth Muscle stomach
6 chr2:11364400-11423800 Weak transcription Duodenum Smooth Muscle Duodenum
7 chr2:11372600-11423800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
8 chr2:11378800-11428600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr2:11383000-11424000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr2:11387800-11417400 Weak transcription Placenta Placenta
11 chr2:11389800-11423800 Weak transcription Colonic Mucosa Colon
12 chr2:11391400-11423800 Weak transcription HUES48 Cell Line embryonic stem cell
13 chr2:11391400-11423800 Weak transcription iPS-20b Cell Line embryonic stem cell
14 chr2:11391400-11423800 Weak transcription Ovary ovary
15 chr2:11391600-11418000 Weak transcription HUES64 Cell Line embryonic stem cell
16 chr2:11391600-11424000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr2:11391600-11424000 Weak transcription NHEK skin
18 chr2:11392400-11423800 Weak transcription ES-I3 Cell Line embryonic stem cell
19 chr2:11394600-11417600 Weak transcription Fetal Lung lung
20 chr2:11394800-11420400 Weak transcription Small Intestine intestine
21 chr2:11394800-11423800 Weak transcription Fetal Kidney kidney
22 chr2:11394800-11432800 Weak transcription Right Ventricle heart
23 chr2:11395400-11417400 Weak transcription Brain Germinal Matrix brain
24 chr2:11396600-11423800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr2:11397600-11417400 Weak transcription Adipose Nuclei Adipose
26 chr2:11397600-11423200 Weak transcription Fetal Adrenal Gland Adrenal Gland
27 chr2:11397800-11417600 Weak transcription Liver Liver
28 chr2:11397800-11417800 Weak transcription HUES6 Cell Line embryonic stem cell
29 chr2:11404400-11423800 Weak transcription Rectal Smooth Muscle rectum
30 chr2:11404400-11423800 Weak transcription Skeletal Muscle Male skeletal muscle
31 chr2:11404600-11423800 Weak transcription Colon Smooth Muscle Colon
32 chr2:11404800-11423800 Weak transcription Primary T helper naive cells fromperipheralblood blood
33 chr2:11404800-11423800 Weak transcription Fetal Heart heart
34 chr2:11406200-11423800 Weak transcription Fetal Brain Female brain
35 chr2:11408600-11418000 Weak transcription Hela-S3 cervix
36 chr2:11409000-11417400 Weak transcription Primary T helper cells PMA-I stimulated --
37 chr2:11409000-11424000 Weak transcription Fetal Brain Male brain
38 chr2:11409400-11423800 Weak transcription NH-A brain
39 chr2:11409800-11423800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
40 chr2:11409800-11424200 Weak transcription HMEC breast
41 chr2:11410200-11423000 Weak transcription Fetal Intestine Small intestine
42 chr2:11410400-11433000 Weak transcription Primary T helper naive cells from peripheral blood blood
43 chr2:11410800-11432800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
44 chr2:11411200-11432800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
45 chr2:11411400-11417200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
46 chr2:11411400-11417800 Weak transcription HSMM muscle
47 chr2:11411400-11423800 Weak transcription Rectal Mucosa Donor 31 rectum
48 chr2:11411400-11426400 Weak transcription Gastric stomach
49 chr2:11411600-11417200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr2:11411600-11417200 Weak transcription Breast Myoepithelial Primary Cells Breast

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Last update: Aug 31, 2015