Variant report

Variant	rs12499208
Chromosome Location	chr4:149041057-149041058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1040288	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10857229	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099677	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12500487	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12506077	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1403142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1403143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs33955319	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4835128	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4835485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835487	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835488	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6813167	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6823544	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6833880	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6855032	0.96[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7665528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7668163	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7687754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7693171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149004600-149052400	Weak transcription	Esophagus	oesophagus
2	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
3	chr4:149020800-149042400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr4:149022400-149042600	Weak transcription	Small Intestine	intestine
5	chr4:149024000-149068600	Weak transcription	Right Ventricle	heart
6	chr4:149026200-149042000	Weak transcription	Fetal Heart	heart
7	chr4:149026200-149044600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr4:149028400-149044200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr4:149030800-149067000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr4:149031200-149044400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:149031600-149043400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr4:149033800-149047000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr4:149035000-149043600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr4:149035200-149042600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr4:149035400-149044200	Weak transcription	Brain Substantia Nigra	brain
16	chr4:149035400-149045800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr4:149035400-149048200	Weak transcription	Brain Angular Gyrus	brain
18	chr4:149037800-149042600	Weak transcription	NHLF	lung
19	chr4:149038000-149041200	Weak transcription	NHDF-Ad	bronchial
20	chr4:149038000-149044200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr4:149038200-149041600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr4:149038200-149043200	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr4:149038400-149041600	Strong transcription	Duodenum Mucosa	Duodenum
24	chr4:149038400-149041600	Strong transcription	Fetal Intestine Large	intestine
25	chr4:149038400-149041600	Strong transcription	Fetal Stomach	stomach
26	chr4:149038400-149041600	Strong transcription	Stomach Smooth Muscle	stomach
27	chr4:149038400-149041800	Strong transcription	Lung	lung
28	chr4:149038400-149042000	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr4:149038600-149041200	Strong transcription	Colon Smooth Muscle	Colon
30	chr4:149038800-149041600	Strong transcription	Liver	Liver
31	chr4:149039000-149041400	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr4:149039000-149041600	Strong transcription	Brain Inferior Temporal Lobe	brain
33	chr4:149039000-149041600	Strong transcription	Pancreas	Pancrea
34	chr4:149039000-149041800	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr4:149039200-149041600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr4:149039200-149041600	Strong transcription	Brain Anterior Caudate	brain
37	chr4:149039200-149041800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr4:149039200-149043000	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr4:149039400-149041400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr4:149039400-149041600	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr4:149039400-149069400	Weak transcription	Colonic Mucosa	Colon
42	chr4:149039600-149042000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:149039800-149041400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr4:149039800-149041600	Strong transcription	Adipose Nuclei	Adipose
45	chr4:149039800-149041800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr4:149040000-149041400	Strong transcription	Brain Hippocampus Middle	brain
47	chr4:149040000-149041400	Strong transcription	Spleen	Spleen
48	chr4:149040000-149041800	Strong transcription	Left Ventricle	heart
49	chr4:149040200-149041200	Weak transcription	HSMMtube	muscle
50	chr4:149040200-149041400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood

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