Variant report

Variant	rs4835487
Chromosome Location	chr4:149051239-149051240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148844312..148847259-chr4:149048458..149051451,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1040288	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10857229	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11099677	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12499208	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12500487	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12506077	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1403142	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1403143	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs33955319	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4835128	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4835485	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835486	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835488	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6813167	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6823544	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6833880	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6855032	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7665528	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7668163	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7687754	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7693171	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3444599	chr4:149050924-149051414	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149004600-149052400	Weak transcription	Esophagus	oesophagus
2	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
3	chr4:149024000-149068600	Weak transcription	Right Ventricle	heart
4	chr4:149030800-149067000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:149039400-149069400	Weak transcription	Colonic Mucosa	Colon
6	chr4:149040600-149083200	Weak transcription	Gastric	stomach
7	chr4:149041400-149067600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:149041400-149092000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr4:149041600-149061400	Weak transcription	Fetal Stomach	stomach
10	chr4:149041600-149069600	Weak transcription	Brain Anterior Caudate	brain
11	chr4:149041800-149074400	Weak transcription	Lung	lung
12	chr4:149045600-149104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr4:149046400-149076600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr4:149046400-149085800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:149046600-149055400	Weak transcription	Brain Substantia Nigra	brain
16	chr4:149046600-149066600	Weak transcription	Ovary	ovary
17	chr4:149046600-149075600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr4:149046600-149087400	Weak transcription	Aorta	Aorta
19	chr4:149047000-149051800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr4:149047000-149066800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr4:149047000-149077200	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr4:149047400-149062600	Weak transcription	Fetal Muscle Leg	muscle
23	chr4:149047400-149066000	Weak transcription	Pancreas	Pancrea
24	chr4:149047400-149067200	Weak transcription	Left Ventricle	heart
25	chr4:149047400-149083800	Weak transcription	Small Intestine	intestine
26	chr4:149047600-149052200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr4:149048800-149066600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr4:149049000-149066000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr4:149049400-149083000	Weak transcription	Fetal Intestine Large	intestine
30	chr4:149049600-149052800	Weak transcription	Fetal Heart	heart
31	chr4:149049600-149072800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr4:149050000-149060000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr4:149050000-149065800	Weak transcription	Liver	Liver
34	chr4:149050400-149059200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr4:149050600-149056200	Weak transcription	Rectal Mucosa Donor 29	rectum

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