Variant report

Variant	rs12500487
Chromosome Location	chr4:149044837-149044838
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1040288	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10857229	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11099677	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12499208	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12506077	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1403142	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1403143	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs33955319	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835128	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4835485	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4835486	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4835487	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4835488	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6813167	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6823544	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6833880	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6855032	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7665528	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7668163	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7687754	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7693171	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149004600-149052400	Weak transcription	Esophagus	oesophagus
2	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
3	chr4:149024000-149068600	Weak transcription	Right Ventricle	heart
4	chr4:149030800-149067000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:149033800-149047000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:149035400-149045800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:149035400-149048200	Weak transcription	Brain Angular Gyrus	brain
8	chr4:149039400-149069400	Weak transcription	Colonic Mucosa	Colon
9	chr4:149040600-149083200	Weak transcription	Gastric	stomach
10	chr4:149041400-149067600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:149041400-149092000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr4:149041600-149045000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr4:149041600-149047200	Weak transcription	Pancreas	Pancrea
14	chr4:149041600-149061400	Weak transcription	Fetal Stomach	stomach
15	chr4:149041600-149069600	Weak transcription	Brain Anterior Caudate	brain
16	chr4:149041800-149074400	Weak transcription	Lung	lung
17	chr4:149042000-149046400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr4:149044200-149046400	ZNF genes & repeats	Adipose Nuclei	Adipose
19	chr4:149044400-149045400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr4:149044600-149046600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
21	chr4:149044800-149045000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
22	chr4:149044800-149047400	ZNF genes & repeats	Liver	Liver

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