Variant report

Variant	rs4835488
Chromosome Location	chr4:149062193-149062194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1040288	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10857229	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11099677	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12499208	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12500487	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12506077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1403142	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1403143	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs33955319	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4835128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4835485	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4835486	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4835487	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6535584	0.82[GIH][hapmap]
rs6813167	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6816918	0.82[EUR][1000 genomes]
rs6823544	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6833880	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6855032	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7665528	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7668163	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7687754	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7693171	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
2	chr4:149024000-149068600	Weak transcription	Right Ventricle	heart
3	chr4:149030800-149067000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:149039400-149069400	Weak transcription	Colonic Mucosa	Colon
5	chr4:149040600-149083200	Weak transcription	Gastric	stomach
6	chr4:149041400-149067600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:149041400-149092000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:149041600-149069600	Weak transcription	Brain Anterior Caudate	brain
9	chr4:149041800-149074400	Weak transcription	Lung	lung
10	chr4:149045600-149104800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:149046400-149076600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr4:149046400-149085800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:149046600-149066600	Weak transcription	Ovary	ovary
14	chr4:149046600-149075600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr4:149046600-149087400	Weak transcription	Aorta	Aorta
16	chr4:149047000-149066800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:149047000-149077200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr4:149047400-149062600	Weak transcription	Fetal Muscle Leg	muscle
19	chr4:149047400-149066000	Weak transcription	Pancreas	Pancrea
20	chr4:149047400-149067200	Weak transcription	Left Ventricle	heart
21	chr4:149047400-149083800	Weak transcription	Small Intestine	intestine
22	chr4:149048800-149066600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr4:149049000-149066000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr4:149049400-149083000	Weak transcription	Fetal Intestine Large	intestine
25	chr4:149049600-149072800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr4:149050000-149065800	Weak transcription	Liver	Liver
27	chr4:149051800-149066800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr4:149053000-149066000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr4:149055000-149066400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr4:149055000-149066400	Weak transcription	Adipose Nuclei	Adipose
31	chr4:149055000-149073600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr4:149055000-149087400	Weak transcription	Psoas Muscle	Psoas
33	chr4:149055600-149067400	Weak transcription	Brain Hippocampus Middle	brain
34	chr4:149060200-149067400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr4:149060800-149067200	Weak transcription	Esophagus	oesophagus
36	chr4:149061000-149063200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr4:149061000-149066000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr4:149061600-149063000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr4:149061600-149063600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr4:149061800-149067400	Weak transcription	Fetal Stomach	stomach
41	chr4:149062000-149063000	Weak transcription	Fetal Heart	heart

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