Variant report

Variant	rs1403143
Chromosome Location	chr4:149042334-149042335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1040288	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10857229	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11099677	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12499208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12500487	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12506077	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1403142	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33955319	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835128	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4835485	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4835486	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4835487	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4835488	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6813167	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6823544	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6833880	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6855032	0.96[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7665528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7668163	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7687754	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7693171	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149004600-149052400	Weak transcription	Esophagus	oesophagus
2	chr4:149018000-149085800	Weak transcription	Stomach Mucosa	stomach
3	chr4:149020800-149042400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr4:149022400-149042600	Weak transcription	Small Intestine	intestine
5	chr4:149024000-149068600	Weak transcription	Right Ventricle	heart
6	chr4:149026200-149044600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr4:149028400-149044200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:149030800-149067000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:149031200-149044400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr4:149031600-149043400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:149033800-149047000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr4:149035000-149043600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr4:149035200-149042600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr4:149035400-149044200	Weak transcription	Brain Substantia Nigra	brain
15	chr4:149035400-149045800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:149035400-149048200	Weak transcription	Brain Angular Gyrus	brain
17	chr4:149037800-149042600	Weak transcription	NHLF	lung
18	chr4:149038000-149044200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr4:149038200-149043200	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr4:149039200-149043000	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr4:149039400-149069400	Weak transcription	Colonic Mucosa	Colon
22	chr4:149040600-149083200	Weak transcription	Gastric	stomach
23	chr4:149040800-149043000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr4:149040800-149043400	Weak transcription	Fetal Intestine Small	intestine
25	chr4:149041200-149044400	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:149041400-149042800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr4:149041400-149043800	Weak transcription	Fetal Muscle Leg	muscle
28	chr4:149041400-149044200	Weak transcription	Brain Hippocampus Middle	brain
29	chr4:149041400-149044200	Weak transcription	Fetal Kidney	kidney
30	chr4:149041400-149044200	Weak transcription	Spleen	Spleen
31	chr4:149041400-149044800	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr4:149041400-149067600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr4:149041400-149092000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr4:149041600-149042800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr4:149041600-149043200	Weak transcription	Adipose Nuclei	Adipose
36	chr4:149041600-149043600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr4:149041600-149044000	Weak transcription	Ovary	ovary
38	chr4:149041600-149044200	Weak transcription	Liver	Liver
39	chr4:149041600-149044200	Weak transcription	Fetal Intestine Large	intestine
40	chr4:149041600-149044200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr4:149041600-149044400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr4:149041600-149044600	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr4:149041600-149045000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr4:149041600-149047200	Weak transcription	Pancreas	Pancrea
45	chr4:149041600-149061400	Weak transcription	Fetal Stomach	stomach
46	chr4:149041600-149069600	Weak transcription	Brain Anterior Caudate	brain
47	chr4:149041800-149043000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr4:149041800-149043400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr4:149041800-149044600	Weak transcription	Left Ventricle	heart
50	chr4:149041800-149044800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links