Variant report

Variant	rs12509729
Chromosome Location	chr4:175655143-175655144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10000984	0.84[JPT][hapmap]
rs10004534	0.84[JPT][hapmap]
rs10471163	0.84[JPT][hapmap]
rs10520290	0.84[JPT][hapmap]
rs12504255	0.83[JPT][hapmap]
rs13142152	0.84[JPT][hapmap]
rs1352056	0.89[JPT][hapmap]
rs1564939	0.84[JPT][hapmap];0.87[MEX][hapmap]
rs4594702	0.84[JPT][hapmap]
rs6853281	0.84[JPT][hapmap]
rs7656851	0.84[JPT][hapmap]
rs7658547	0.84[JPT][hapmap]
rs7685854	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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