Variant report

Variant	rs7658547
Chromosome Location	chr4:175639439-175639440
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr4:175639313-175639649	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
GLRA3	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10000984	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10004534	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10007273	0.91[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap]
rs10009999	1.00[CHB][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap]
rs10011025	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10013656	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs10020688	0.89[ASN][1000 genomes]
rs10213085	0.88[ASN][1000 genomes]
rs10471163	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10520290	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11725853	0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs11737591	0.87[ASN][1000 genomes]
rs12499257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12504255	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs12509326	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12509729	0.84[JPT][hapmap]
rs13142152	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1352056	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1485939	0.91[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap]
rs1485940	0.85[YRI][hapmap]
rs1485941	0.90[CHB][hapmap];0.82[JPT][hapmap];0.93[YRI][hapmap]
rs1564939	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1586338	0.91[CHB][hapmap];0.83[JPT][hapmap];0.87[YRI][hapmap]
rs1586339	0.87[ASN][1000 genomes]
rs17060785	0.95[ASN][1000 genomes]
rs28408827	0.87[ASN][1000 genomes]
rs28432255	0.86[ASN][1000 genomes]
rs28538678	0.92[ASN][1000 genomes]
rs28688380	0.94[ASN][1000 genomes]
rs2877828	0.95[ASN][1000 genomes]
rs35706713	0.89[ASN][1000 genomes]
rs4447833	0.95[ASN][1000 genomes]
rs4594702	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6853281	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7656851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685854	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs9312559	1.00[CHB][hapmap];0.81[JPT][hapmap];0.86[YRI][hapmap]
rs9884969	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv880584	chr4:175505749-175644689	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175638600-175639800	Enhancers	Adipose Nuclei	Adipose
2	chr4:175638600-175640000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr4:175639000-175639600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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