Variant report

Variant	rs11725853
Chromosome Location	chr4:175642699-175642700
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:175634568..175636436-chr4:175640202..175642799,3	K562	blood:

Variant related genes	Relation type
ENSG00000145451	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10000984	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs10004534	0.91[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs10007273	0.81[CHB][hapmap]
rs10009999	0.90[CHB][hapmap]
rs10011025	0.91[CHB][hapmap]
rs10013656	0.80[CHB][hapmap]
rs10020688	0.88[ASN][1000 genomes]
rs10213085	0.87[ASN][1000 genomes]
rs10471163	0.83[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs10520290	0.91[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs11737591	0.86[ASN][1000 genomes]
rs12499257	0.96[ASN][1000 genomes]
rs12504255	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs12509326	0.89[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs13142152	0.83[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs1352056	0.80[CHB][hapmap];0.94[JPT][hapmap]
rs1485939	0.81[CHB][hapmap]
rs1564939	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs1586338	0.81[CHB][hapmap]
rs1586339	0.86[ASN][1000 genomes]
rs17060785	0.95[ASN][1000 genomes]
rs28408827	0.86[ASN][1000 genomes]
rs28432255	0.85[ASN][1000 genomes]
rs28538678	0.91[ASN][1000 genomes]
rs28688380	0.93[ASN][1000 genomes]
rs2877828	0.95[ASN][1000 genomes]
rs35706713	0.88[ASN][1000 genomes]
rs4447833	0.95[ASN][1000 genomes]
rs4594702	1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[ASN][1000 genomes]
rs6853281	0.83[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs7656851	0.91[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs7658547	0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs7685854	1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes]
rs9312559	0.91[CHB][hapmap]
rs9884969	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv880584	chr4:175505749-175644689	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Urinary albumin excretion rate in type 1 diabetes	24595857	GWAS catalog

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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