Variant report

Variant	rs12531476
Chromosome Location	chr7:39109255-39109256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10258862	0.95[ASN][1000 genomes]
rs11773650	0.97[ASN][1000 genomes]
rs12531789	0.82[EUR][1000 genomes]
rs12539432	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1404999	0.95[ASN][1000 genomes]
rs1534416	0.95[ASN][1000 genomes]
rs16880005	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17171526	0.95[ASN][1000 genomes]
rs17171527	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1881132	0.95[ASN][1000 genomes]
rs35319478	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36065581	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39108200-39109600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:39108400-39109600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:39108400-39110600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr7:39108600-39110600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr7:39108800-39109600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:39108800-39110400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:39108800-39110400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr7:39109000-39109600	Enhancers	Placenta	Placenta
9	chr7:39109000-39109800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:39109000-39110400	Enhancers	Primary hematopoietic stem cells	blood
11	chr7:39109000-39112600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:39109200-39109400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
13	chr7:39109200-39109600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr7:39109200-39110400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:39109200-39111800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:39109200-39112400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:39109200-39112600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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