Variant report

Variant	rs17171527
Chromosome Location	chr7:39117788-39117789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39109858..39114276-chr7:39116660..39120717,5	K562	blood:
2	chr7:39115125..39117886-chr7:39122371..39124754,2	K562	blood:

Variant related genes	Relation type
ENSG00000106536	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10258862	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];1.00[ASN][1000 genomes]
rs10273694	0.89[CHD][hapmap]
rs1116813	1.00[CHB][hapmap];0.84[CHD][hapmap]
rs11773650	0.95[ASN][1000 genomes]
rs12216590	1.00[CHD][hapmap];0.88[MEX][hapmap]
rs12531458	0.89[CHB][hapmap];0.84[CHD][hapmap]
rs12531476	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12531789	0.89[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs12539432	0.81[EUR][1000 genomes]
rs12540036	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap]
rs12701690	1.00[CHB][hapmap];0.84[CHD][hapmap]
rs13234105	1.00[CHB][hapmap];0.84[CHD][hapmap]
rs1358422	1.00[CHB][hapmap]
rs1404999	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap];1.00[ASN][1000 genomes]
rs1527949	1.00[CHB][hapmap];0.89[CHD][hapmap]
rs1534416	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[ASN][1000 genomes]
rs16880005	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171520	1.00[CHB][hapmap]
rs17171521	1.00[CHB][hapmap];0.84[CHD][hapmap]
rs17171526	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[ASN][1000 genomes]
rs1881132	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs35319478	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35787066	1.00[CHB][hapmap];0.84[CHD][hapmap]
rs36065581	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39113600-39123400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:39115600-39125200	Weak transcription	H1 Cell Line	embryonic stem cell

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