Variant report

Variant	rs12540036
Chromosome Location	chr7:39091288-39091289
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:39091070..39092800-chr7:39094208..39096602,2	K562	blood:
2	chr7:39067188..39069142-chr7:39090366..39092625,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10258862	1.00[CHB][hapmap];0.84[CHD][hapmap]
rs1116813	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12216590	0.84[CHD][hapmap]
rs12531458	0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12531789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534015	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12539432	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12701690	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13234105	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13244920	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1358422	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.80[GIH][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1404999	1.00[CHB][hapmap];0.84[CHD][hapmap]
rs1527949	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1534416	1.00[CHB][hapmap]
rs16880005	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs17171520	1.00[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17171521	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17171526	1.00[CHB][hapmap]
rs17171527	0.89[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap]
rs1881132	1.00[CHB][hapmap]
rs34013745	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34191717	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35218421	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35787066	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4512300	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9691458	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9719863	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39082400-39094000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:39083400-39091600	Weak transcription	Aorta	Aorta

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