Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr7:39121954-39122154	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr7:39122000-39122479	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
POU6F2	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10258862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1116813	1.00[CHB][hapmap]
rs11773650	0.95[ASN][1000 genomes]
rs12531458	0.89[CHB][hapmap]
rs12531476	0.95[ASN][1000 genomes]
rs12531789	1.00[CHB][hapmap]
rs12540036	1.00[CHB][hapmap]
rs12701690	1.00[CHB][hapmap]
rs13234105	1.00[CHB][hapmap]
rs1358422	1.00[CHB][hapmap]
rs1404999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1527949	1.00[CHB][hapmap]
rs1534416	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16880005	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17171520	1.00[CHB][hapmap]
rs17171521	1.00[CHB][hapmap]
rs17171526	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171527	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs35319478	0.97[ASN][1000 genomes]
rs35787066	1.00[CHB][hapmap]
rs36065581	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39113600-39123400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:39115600-39125200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr7:39120400-39123600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:39121400-39123200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:39121800-39122200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:39122000-39122200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr7:39122000-39123400	Enhancers	HUES64 Cell Line	embryonic stem cell

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