Variant report

Variant	rs35319478
Chromosome Location	chr7:39108422-39108423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10258862	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11773650	0.98[ASN][1000 genomes]
rs12531476	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12531789	0.83[EUR][1000 genomes]
rs12539432	0.82[EUR][1000 genomes]
rs1404999	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1534416	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16880005	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17171526	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17171527	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1881132	0.97[ASN][1000 genomes]
rs36065581	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024142	chr7:38978728-39300444	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39108200-39109200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:39108200-39109600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:39108400-39109000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:39108400-39109200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr7:39108400-39109200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:39108400-39109600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:39108400-39110600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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