Variant report

Variant	rs12544343
Chromosome Location	chr8:129937763-129937764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:129937695..129940565-chr8:129949796..129952119,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12541496	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12541508	0.82[EUR][1000 genomes]
rs12544345	0.84[EUR][1000 genomes]
rs12548853	0.82[EUR][1000 genomes]
rs12549424	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12549751	0.84[EUR][1000 genomes]
rs13250924	0.88[EUR][1000 genomes]
rs13257555	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13269457	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13269648	0.84[EUR][1000 genomes]
rs13272774	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13275784	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13280887	0.88[EUR][1000 genomes]
rs1596125	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16903682	0.86[EUR][1000 genomes]
rs2028517	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34093858	0.84[EUR][1000 genomes]
rs34757177	0.84[EUR][1000 genomes]
rs34825160	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35081453	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35181074	0.90[EUR][1000 genomes]
rs35296092	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35299722	0.88[EUR][1000 genomes]
rs35643497	0.86[EUR][1000 genomes]
rs35697214	0.84[EUR][1000 genomes]
rs35950030	0.92[EUR][1000 genomes]
rs35960460	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35989243	0.83[EUR][1000 genomes]
rs36040241	0.84[EUR][1000 genomes]
rs36141457	0.81[EUR][1000 genomes]
rs36142507	0.84[EUR][1000 genomes]
rs56884764	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57630172	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58015045	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61025881	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61580176	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67628488	0.84[EUR][1000 genomes]
rs73373832	0.82[EUR][1000 genomes]
rs73385409	0.92[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129937400-129958800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:129937600-129940400	Weak transcription	Dnd41	blood

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