Variant report

Variant	rs35181074
Chromosome Location	chr8:129879904-129879905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:129872569..129876540-chr8:129878616..129881184,3	K562	blood:
2	chr8:129865860..129869579-chr8:129877876..129880689,4	K562	blood:
3	chr8:129878873..129881112-chr8:129881741..129884417,2	K562	blood:
4	chr8:129868858..129872488-chr8:129878808..129881369,3	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12541496	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12541508	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12544343	0.90[EUR][1000 genomes]
rs12544345	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12548853	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12549424	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12549751	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13250924	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13257555	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13269457	0.90[EUR][1000 genomes]
rs13269648	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13272774	0.90[EUR][1000 genomes]
rs13273255	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13275784	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13280887	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1596125	0.90[EUR][1000 genomes]
rs16903682	0.96[EUR][1000 genomes]
rs2028517	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34093858	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34757177	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34825160	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35055513	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35081453	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35296092	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35299722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35643497	0.96[EUR][1000 genomes]
rs35697214	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35950030	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35960460	0.90[EUR][1000 genomes]
rs35989243	0.92[EUR][1000 genomes]
rs36040241	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36141457	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs36142507	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56884764	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57630172	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58015045	0.90[EUR][1000 genomes]
rs61025881	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61580176	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67628488	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73373832	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73385409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517445	chr8:129859924-129881299	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129874600-129886200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:129875000-129887000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:129876200-129886200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:129877000-129885000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:129878600-129880000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:129879000-129880000	Enhancers	HSMM	muscle
7	chr8:129879000-129880200	Enhancers	NHDF-Ad	bronchial
8	chr8:129879000-129881400	Enhancers	Osteobl	bone
9	chr8:129879000-129881600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:129879600-129880800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:129879800-129881000	Weak transcription	NH-A	brain

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