Variant report

Variant	rs12548853
Chromosome Location	chr8:129824397-129824398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:129821418..129825187-chr8:129827074..129828833,3	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12541496	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12541508	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12544343	0.82[EUR][1000 genomes]
rs12544345	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12548216	0.84[AMR][1000 genomes]
rs12549424	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12549751	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13250924	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13257555	0.82[EUR][1000 genomes]
rs13269457	0.82[EUR][1000 genomes]
rs13269648	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13272774	0.82[EUR][1000 genomes]
rs13273255	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13275784	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13280887	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1596125	0.82[EUR][1000 genomes]
rs16903682	0.84[EUR][1000 genomes]
rs2028517	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34093858	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34757177	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34825160	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35055513	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35081453	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35181074	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35296092	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35299722	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35643497	0.84[EUR][1000 genomes]
rs35697214	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35950030	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35960460	0.82[EUR][1000 genomes]
rs35989243	0.81[EUR][1000 genomes]
rs36040241	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36141457	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36142507	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56884764	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57630172	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58015045	0.82[EUR][1000 genomes]
rs61025881	0.82[EUR][1000 genomes]
rs61580176	0.82[EUR][1000 genomes]
rs67628488	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73373832	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73385409	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129820000-129825600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:129821600-129825200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:129822600-129825400	ZNF genes & repeats	Liver	Liver

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