The 2.0 version of rSNPBase

Variant report

Variant rs12567790
Chromosome Location chr1:227187003-227187004
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227154400-227294200 Weak transcription Hela-S3 cervix
2 chr1:227163400-227191200 Weak transcription iPS-15b Cell Line embryonic stem cell
3 chr1:227175200-227198400 Weak transcription A549 lung
4 chr1:227175200-227210200 Weak transcription HMEC breast
5 chr1:227175600-227216200 Weak transcription H9 Cell Line embryonic stem cell
6 chr1:227176000-227190200 Weak transcription Esophagus oesophagus
7 chr1:227176000-227191800 Weak transcription Placenta Amnion Placenta Amnion
8 chr1:227176000-227216400 Weak transcription NHLF lung
9 chr1:227176400-227190400 Weak transcription Osteobl bone
10 chr1:227176600-227190000 Weak transcription HUES6 Cell Line embryonic stem cell
11 chr1:227177200-227188600 Weak transcription Fetal Lung lung
12 chr1:227177400-227255200 Weak transcription Small Intestine intestine
13 chr1:227178200-227188600 Weak transcription HSMMtube muscle
14 chr1:227178400-227190400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr1:227178400-227271200 Weak transcription Psoas Muscle Psoas
16 chr1:227178600-227206600 Weak transcription Primary hematopoietic stem cells blood
17 chr1:227178600-227226200 Weak transcription Primary hematopoietic stem cells short term culture blood
18 chr1:227178800-227188800 Weak transcription Muscle Satellite Cultured Cells --
19 chr1:227179000-227188400 Weak transcription Duodenum Smooth Muscle Duodenum
20 chr1:227179400-227188200 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr1:227179400-227198400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
22 chr1:227179400-227204400 Weak transcription Stomach Mucosa stomach
23 chr1:227179400-227215000 Weak transcription Placenta Placenta
24 chr1:227179600-227213800 Weak transcription NH-A brain
25 chr1:227180800-227187800 Weak transcription HSMM muscle
26 chr1:227180800-227190200 Weak transcription K562 blood
27 chr1:227181200-227190400 Weak transcription Rectal Smooth Muscle rectum
28 chr1:227181600-227191200 Weak transcription Skeletal Muscle Male skeletal muscle
29 chr1:227181800-227188000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr1:227181800-227188200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
31 chr1:227181800-227188600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr1:227182000-227188200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr1:227182000-227190200 Weak transcription Skeletal Muscle Female skeletal muscle
34 chr1:227182000-227216000 Weak transcription Colon Smooth Muscle Colon
35 chr1:227182200-227190200 Weak transcription Ovary ovary
36 chr1:227182200-227205600 Weak transcription Fetal Brain Male brain
37 chr1:227182400-227190800 Weak transcription NHEK skin
38 chr1:227182600-227187800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr1:227182600-227188200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:227182600-227189000 Weak transcription Fetal Brain Female brain
41 chr1:227182600-227190000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
42 chr1:227182600-227190200 Weak transcription Gastric stomach
43 chr1:227182600-227190200 Weak transcription Right Ventricle heart
44 chr1:227182600-227191400 Weak transcription Fetal Kidney kidney
45 chr1:227182600-227206400 Weak transcription Brain Germinal Matrix brain
46 chr1:227182800-227188000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
47 chr1:227182800-227188600 Weak transcription NHDF-Ad bronchial
48 chr1:227182800-227224200 Weak transcription Spleen Spleen
49 chr1:227183000-227187800 Weak transcription Fetal Muscle Trunk muscle
50 chr1:227183000-227187800 Weak transcription Fetal Muscle Leg muscle

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Last update: Aug 31, 2015