The 2.0 version of rSNPBase

Variant report

Variant rs12565025
Chromosome Location chr1:227163101-227163102
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227131000-227171800 Weak transcription Primary T killer memory cells from peripheral blood blood
2 chr1:227147000-227177000 Weak transcription Primary T killer naive cells fromperipheralblood blood
3 chr1:227148600-227180800 Weak transcription Pancreatic Islets Pancreatic Islet
4 chr1:227154200-227164200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
5 chr1:227154400-227165800 Weak transcription H1 Cell Line embryonic stem cell
6 chr1:227154400-227294200 Weak transcription Hela-S3 cervix
7 chr1:227154600-227163200 Weak transcription Fetal Thymus thymus
8 chr1:227154800-227176800 Weak transcription Primary T helper naive cells from peripheral blood blood
9 chr1:227158400-227164600 Weak transcription Dnd41 blood
10 chr1:227158400-227173200 Weak transcription K562 blood
11 chr1:227158400-227174600 Weak transcription HUES48 Cell Line embryonic stem cell
12 chr1:227158400-227183000 Weak transcription ES-I3 Cell Line embryonic stem cell
13 chr1:227159000-227175800 Strong transcription Primary hematopoietic stem cells short term culture blood
14 chr1:227159800-227163800 Strong transcription Primary T regulatory cells fromperipheralblood blood
15 chr1:227159800-227165800 Weak transcription Primary hematopoietic stem cells blood
16 chr1:227159800-227174000 Weak transcription HUES64 Cell Line embryonic stem cell
17 chr1:227160000-227173600 Weak transcription A549 lung
18 chr1:227160000-227174400 Weak transcription iPS-20b Cell Line embryonic stem cell
19 chr1:227160000-227174400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
20 chr1:227160000-227174800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr1:227160000-227177200 Weak transcription GM12878-XiMat blood
22 chr1:227160200-227165200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr1:227160200-227165200 Enhancers Liver Liver
24 chr1:227160400-227163200 Strong transcription Monocytes-CD14+_RO01746 blood
25 chr1:227160400-227164600 Enhancers Right Atrium heart
26 chr1:227160400-227164800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
27 chr1:227160400-227165200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
28 chr1:227160600-227163200 Flanking Active TSS Skeletal Muscle Female skeletal muscle
29 chr1:227160600-227163200 Enhancers Small Intestine intestine
30 chr1:227160600-227163400 Enhancers Fetal Heart heart
31 chr1:227160600-227163400 Flanking Active TSS Stomach Smooth Muscle stomach
32 chr1:227160600-227163800 Enhancers Brain Angular Gyrus brain
33 chr1:227160600-227163800 Enhancers Fetal Muscle Trunk muscle
34 chr1:227160600-227163800 Enhancers Fetal Muscle Leg muscle
35 chr1:227160600-227163800 Enhancers Ovary ovary
36 chr1:227160600-227163800 Flanking Active TSS Skeletal Muscle Male skeletal muscle
37 chr1:227160600-227165000 Enhancers Right Ventricle heart
38 chr1:227160600-227165400 Enhancers Left Ventricle heart
39 chr1:227160600-227165800 Enhancers Psoas Muscle Psoas
40 chr1:227160600-227175600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
41 chr1:227160800-227163200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
42 chr1:227160800-227163200 Enhancers Breast Myoepithelial Primary Cells Breast
43 chr1:227160800-227163400 Enhancers Fetal Adrenal Gland Adrenal Gland
44 chr1:227160800-227163600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
45 chr1:227160800-227163800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
46 chr1:227160800-227163800 Enhancers Fetal Brain Male brain
47 chr1:227160800-227164200 Weak transcription Primary neutrophils fromperipheralblood blood
48 chr1:227160800-227164800 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr1:227160800-227164800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
50 chr1:227160800-227181800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015