The 2.0 version of rSNPBase

Variant report

Variant rs56043893
Chromosome Location chr1:227174408-227174409
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227147000-227177000 Weak transcription Primary T killer naive cells fromperipheralblood blood
2 chr1:227148600-227180800 Weak transcription Pancreatic Islets Pancreatic Islet
3 chr1:227154400-227294200 Weak transcription Hela-S3 cervix
4 chr1:227154800-227176800 Weak transcription Primary T helper naive cells from peripheral blood blood
5 chr1:227158400-227174600 Weak transcription HUES48 Cell Line embryonic stem cell
6 chr1:227158400-227183000 Weak transcription ES-I3 Cell Line embryonic stem cell
7 chr1:227159000-227175800 Strong transcription Primary hematopoietic stem cells short term culture blood
8 chr1:227160000-227174800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
9 chr1:227160000-227177200 Weak transcription GM12878-XiMat blood
10 chr1:227160600-227175600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
11 chr1:227160800-227181800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr1:227162200-227176000 Strong transcription Primary T cells from cord blood blood
13 chr1:227162400-227175200 Strong transcription Primary monocytes fromperipheralblood blood
14 chr1:227162400-227181600 Weak transcription NHEK skin
15 chr1:227162600-227175800 Strong transcription Primary T helper cells fromperipheralblood blood
16 chr1:227162600-227176600 Strong transcription Thymus Thymus
17 chr1:227163000-227180000 Weak transcription HSMM muscle
18 chr1:227163200-227175400 Strong transcription Fetal Intestine Small intestine
19 chr1:227163400-227191200 Weak transcription iPS-15b Cell Line embryonic stem cell
20 chr1:227163800-227176200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr1:227163800-227180400 Weak transcription Fetal Brain Male brain
22 chr1:227164200-227175800 Strong transcription HepG2 liver
23 chr1:227164400-227175600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
24 chr1:227164600-227175000 Strong transcription Primary T regulatory cells fromperipheralblood blood
25 chr1:227164800-227175200 Strong transcription Primary T helper naive cells fromperipheralblood blood
26 chr1:227165000-227175000 Strong transcription Duodenum Mucosa Duodenum
27 chr1:227165000-227175400 Genic enhancers Right Ventricle heart
28 chr1:227165000-227176000 Strong transcription Monocytes-CD14+_RO01746 blood
29 chr1:227165200-227175000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
30 chr1:227165400-227175800 Strong transcription Ovary ovary
31 chr1:227166200-227174800 Strong transcription Primary T cells fromperipheralblood blood
32 chr1:227167000-227175200 Strong transcription Primary B cells from peripheral blood blood
33 chr1:227168000-227174600 Strong transcription Rectal Mucosa Donor 29 rectum
34 chr1:227168800-227175400 Weak transcription Psoas Muscle Psoas
35 chr1:227168800-227175600 Genic enhancers Skeletal Muscle Male skeletal muscle
36 chr1:227168800-227175600 Genic enhancers Skeletal Muscle Female skeletal muscle
37 chr1:227169000-227175000 Strong transcription Adipose Nuclei Adipose
38 chr1:227169200-227175400 Strong transcription Fetal Thymus thymus
39 chr1:227169400-227175000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
40 chr1:227169400-227175200 Strong transcription Sigmoid Colon Sigmoid Colon
41 chr1:227169600-227175000 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
42 chr1:227169600-227175000 Strong transcription Gastric stomach
43 chr1:227169600-227175800 Strong transcription Liver Liver
44 chr1:227169800-227175000 Strong transcription Fetal Intestine Large intestine
45 chr1:227169800-227175800 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
46 chr1:227170000-227175000 Strong transcription Primary T helper cells PMA-I stimulated --
47 chr1:227170000-227176000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr1:227170200-227175400 Strong transcription Colon Smooth Muscle Colon
49 chr1:227170400-227176200 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr1:227170400-227176400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015