The 2.0 version of rSNPBase

Variant report

Variant rs16846808
Chromosome Location chr1:227194932-227194933
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227154400-227294200 Weak transcription Hela-S3 cervix
2 chr1:227175200-227198400 Weak transcription A549 lung
3 chr1:227175200-227210200 Weak transcription HMEC breast
4 chr1:227175600-227216200 Weak transcription H9 Cell Line embryonic stem cell
5 chr1:227176000-227216400 Weak transcription NHLF lung
6 chr1:227177400-227255200 Weak transcription Small Intestine intestine
7 chr1:227178400-227271200 Weak transcription Psoas Muscle Psoas
8 chr1:227178600-227206600 Weak transcription Primary hematopoietic stem cells blood
9 chr1:227178600-227226200 Weak transcription Primary hematopoietic stem cells short term culture blood
10 chr1:227179400-227198400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr1:227179400-227204400 Weak transcription Stomach Mucosa stomach
12 chr1:227179400-227215000 Weak transcription Placenta Placenta
13 chr1:227179600-227213800 Weak transcription NH-A brain
14 chr1:227182000-227216000 Weak transcription Colon Smooth Muscle Colon
15 chr1:227182200-227205600 Weak transcription Fetal Brain Male brain
16 chr1:227182600-227206400 Weak transcription Brain Germinal Matrix brain
17 chr1:227182800-227224200 Weak transcription Spleen Spleen
18 chr1:227183200-227202600 Weak transcription Pancreas Pancrea
19 chr1:227183200-227228200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
20 chr1:227183200-227240400 Weak transcription Colonic Mucosa Colon
21 chr1:227183600-227204600 Weak transcription HepG2 liver
22 chr1:227183800-227203000 Weak transcription iPS-20b Cell Line embryonic stem cell
23 chr1:227184000-227203200 Weak transcription Brain Substantia Nigra brain
24 chr1:227184000-227204200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr1:227184000-227214600 Weak transcription H1 Cell Line embryonic stem cell
26 chr1:227184000-227234000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
27 chr1:227184200-227206600 Weak transcription iPS-18 Cell Line embryonic stem cell
28 chr1:227184600-227208000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr1:227187200-227218600 Weak transcription ES-WA7 Cell Line embryonic stem cell
30 chr1:227189200-227207400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr1:227190600-227202600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr1:227190600-227206600 Weak transcription Muscle Satellite Cultured Cells --
33 chr1:227190600-227217000 Weak transcription Esophagus oesophagus
34 chr1:227190600-227223200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr1:227190600-227272600 Weak transcription Lung lung
36 chr1:227191200-227202600 Weak transcription Fetal Intestine Small intestine
37 chr1:227191200-227208200 Weak transcription NHEK skin
38 chr1:227191200-227214400 Weak transcription Aorta Aorta
39 chr1:227191400-227204000 Weak transcription NHDF-Ad bronchial
40 chr1:227191600-227206600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr1:227191800-227198400 Weak transcription Fetal Kidney kidney
42 chr1:227191800-227198400 Weak transcription HSMM muscle
43 chr1:227191800-227198600 Weak transcription K562 blood
44 chr1:227191800-227206400 Weak transcription HUES6 Cell Line embryonic stem cell
45 chr1:227192200-227207000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
46 chr1:227192400-227206600 Weak transcription Placenta Amnion Placenta Amnion
47 chr1:227192600-227198400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr1:227192600-227204200 Weak transcription Skeletal Muscle Female skeletal muscle
49 chr1:227192600-227206000 Weak transcription ES-I3 Cell Line embryonic stem cell
50 chr1:227192600-227220200 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015