The 2.0 version of rSNPBase

Variant report

Variant rs2009053
Chromosome Location chr1:227135254-227135255
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:227128600-227136600 Weak transcription Aorta Aorta
2 chr1:227128800-227135400 Enhancers Sigmoid Colon Sigmoid Colon
3 chr1:227129000-227162600 Weak transcription Fetal Kidney kidney
4 chr1:227129200-227135400 Enhancers Stomach Mucosa stomach
5 chr1:227129200-227135800 Weak transcription Fetal Stomach stomach
6 chr1:227130200-227145600 Weak transcription Primary hematopoietic stem cells blood
7 chr1:227130200-227146000 Weak transcription Primary T regulatory cells fromperipheralblood blood
8 chr1:227130400-227137000 Weak transcription Primary B cells from cord blood blood
9 chr1:227130400-227137000 Weak transcription Primary T cells from cord blood blood
10 chr1:227130400-227141000 Weak transcription HUES48 Cell Line embryonic stem cell
11 chr1:227130400-227142400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr1:227130400-227142400 Weak transcription Hela-S3 cervix
13 chr1:227130400-227154600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr1:227130800-227142400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
15 chr1:227131000-227171800 Weak transcription Primary T killer memory cells from peripheral blood blood
16 chr1:227131400-227153800 Weak transcription Primary T helper naive cells from peripheral blood blood
17 chr1:227131600-227135800 Weak transcription Primary monocytes fromperipheralblood blood
18 chr1:227131800-227135600 Weak transcription Primary B cells from peripheral blood blood
19 chr1:227131800-227136800 Weak transcription Primary T helper naive cells fromperipheralblood blood
20 chr1:227131800-227147200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
21 chr1:227132600-227137200 Weak transcription Primary T helper cells PMA-I stimulated --
22 chr1:227133000-227139000 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr1:227133000-227146200 Weak transcription H9 Cell Line embryonic stem cell
24 chr1:227133200-227138800 Weak transcription Monocytes-CD14+_RO01746 blood
25 chr1:227133200-227149800 Weak transcription Primary T helper cells fromperipheralblood blood
26 chr1:227133400-227141400 Weak transcription K562 blood
27 chr1:227133600-227136800 Weak transcription A549 lung
28 chr1:227133600-227142600 Weak transcription Thymus Thymus
29 chr1:227133600-227142600 Weak transcription Spleen Spleen
30 chr1:227133800-227135400 Enhancers Liver Liver
31 chr1:227134000-227141000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr1:227134000-227142400 Weak transcription Rectal Smooth Muscle rectum
33 chr1:227134200-227135800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr1:227134400-227135600 Weak transcription Breast Myoepithelial Primary Cells Breast
35 chr1:227134400-227135800 Enhancers Skeletal Muscle Female skeletal muscle
36 chr1:227134400-227136800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
37 chr1:227134400-227137200 Enhancers Pancreas Pancrea
38 chr1:227134400-227138600 Weak transcription H1 Cell Line embryonic stem cell
39 chr1:227134400-227144800 Weak transcription Fetal Intestine Large intestine
40 chr1:227134400-227151800 Weak transcription Small Intestine intestine
41 chr1:227134400-227153000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
42 chr1:227134600-227135600 Weak transcription Brain Inferior Temporal Lobe brain
43 chr1:227134600-227135800 Weak transcription Lung lung
44 chr1:227134600-227136000 Enhancers Skeletal Muscle Male skeletal muscle
45 chr1:227134600-227136800 Weak transcription Left Ventricle heart
46 chr1:227134600-227136800 Weak transcription Right Ventricle heart
47 chr1:227134600-227138800 Weak transcription Esophagus oesophagus
48 chr1:227134600-227150200 Weak transcription Duodenum Mucosa Duodenum
49 chr1:227134800-227135600 Weak transcription Brain Anterior Caudate brain
50 chr1:227134800-227135600 Weak transcription Brain Hippocampus Middle brain

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Last update: Aug 31, 2015