Variant report

Variant	rs12584779
Chromosome Location	chr13:61824599-61824600
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1483698	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7323627	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7333785	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7337453	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9563898	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9563899	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9570488	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9570489	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9570490	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9570491	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9570492	0.81[AMR][1000 genomes]
rs9570494	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9570497	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9570499	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9570500	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9570501	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9570502	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9570511	0.88[EUR][1000 genomes]
rs9570516	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832627	chr13:61642811-61829217	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv900244	chr13:61769349-61856666	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:61822200-61826000	Weak transcription	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links